SRX026264
GSM575225: CDX2 ChIP-seq in differentiated cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDX2

Cell type

Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
differentiated Caco-2 cells
cell type
human intestinal cell line
cell line
Caco-2
chip antibody
CDX2 (Bethyl Labs BL3194)

Sequenced DNA Library

library_name
GSM575225: CDX2 ChIP-seq in differentiated cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17193748
Reads aligned (%)
97.3
Duplicates removed (%)
12.0
Number of peaks
11296 (qval < 1E-05)

hg19

Number of total reads
17193748
Reads aligned (%)
96.6
Duplicates removed (%)
13.0
Number of peaks
11361 (qval < 1E-05)

Base call quality data from DBCLS SRA